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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20043574_20056113_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20043574 - 20056113
Intron Length:
12540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
AATCCAATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTGTTTCAATC
Flanking Amino Acid:
LQLLQCIVDEESPVLPVGEF
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
63.3
0.3
1
52.3
40.8
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
50.7
0
1.6
61.08
39.5

Associated Gene:

Gene:
MAP2K5
Ensembl Gene ID:
ENSAPLG00000007755
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020223
19952237 - 20077955
125719
ENSAPLT00000008106
19952237 - 20077955
125719