About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20113877_20115794_F

Intron Information:

Intron Rank:
145822
Intron Class:
major
Intron Phase:
Intron Coordinates:
20113877 - 20115794
Intron Length:
1918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACGGAT
U12 Branch Point Sequence:
TGGCTGGGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
49.9
-0
1.3
49.1
38
Major PPT
80.1
0.68
0.9
73.4
37
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
33.7
-1.2
2.3
42.18
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028582
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035040
20113784 - 20118961
5178