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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20147407_20148011_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20147407 - 20148011
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CATGTTGTAACT
Flanking Amino Acid:
PQQVQQISSSMDISGTKCDF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
73.2
0.52
0.9
68.7
37.2
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
48.5
-0
2.1
67.59
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002561
20144858 - 20166318
21461