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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20148060_20149537_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20148060 - 20149537
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ACATCAGAAATG
Flanking Amino Acid:
KCDFTVQVQLRFCLSETSCP
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
73.9
0.59
1
81
30.2
Major PPT
83
0.74
0.8
81.2
30.9
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
39.3
-0.9
2.3
43.25
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002561
20144858 - 20166318
21461