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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20150364_20153149_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20150364 - 20153149
Intron Length:
2786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TGTCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTGATT
Flanking Amino Acid:
VVSWTAEIGRNYSMAVYLVK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.8
0.78
0.8
76.7
37.4
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
68.2
0.65
1.2
82.69
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002561
20144858 - 20166318
21461