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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20153256_20154755_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20153256 - 20154755
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACGTCTG
5'SS Class:
major
3'SS Sequence:
TTTCAAATAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTCTTTCAAAT
Flanking Amino Acid:
IRNPDHSRALIKEKLTADPD
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.6
44.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
69.7
0.44
1
63.8
40.4
Minor 5ss
38.5
-1.3
3.2
49.8
40.7
Minor BPS
58.5
0.35
1.6
78.7
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002561
20144858 - 20166318
21461