Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20154830_20160070_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20154830 - 20160070

Intron Length:

5241

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

TTTTCTCTTAAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTGAT

U12 Branch Point Sequence:

TTTCTCTTAAAG

Flanking Amino Acid:

TSLRVSLLCPLGKMRLTIPC

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

79.3

34.5

Major BPS

64.7

0.36

1.2

55.1

42.1

Major PPT

81.5

0.71

0.9

82.7

26.4

Minor 5ss

40.8

-1

3.4

63.8

41.6

Minor BPS

70.4

0.5

1.4

74.05

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002495

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002561

20144858 - 20166318

21461