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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20160232_20161691_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20160232 - 20161691
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AAATTTTTGATC
Flanking Amino Acid:
KAPYEHLIIDGLFMEILKYC
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.1
0.54
1
69.7
40.7
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
58
0.24
1.1
60.27
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002561
20144858 - 20166318
21461