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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20162319_20163228_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20162319 - 20163228
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTATATTTTACA
Flanking Amino Acid:
ISPASPLNNKGILNLPHQAS
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
80.6
33.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
84.7
0.78
0.8
76.9
37.3
Minor 5ss
33.5
-1.9
3.1
41.3
44.8
Minor BPS
58.9
0.27
1.8
73.05
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002495
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002561
20144858 - 20166318
21461