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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20172782_20172994_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20172782 - 20172994
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGTAAA
U12 Branch Point Sequence:
TCGTAAAGAATC
Flanking Amino Acid:
VQRHLHLHKIERNAELDFST
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68
38.8
Major BPS
62.6
0.31
1.2
63.9
40.2
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
29.5
-2.3
2.7
34.5
41
Minor BPS
40.9
-0.7
2
50.49
39.9

Associated Gene:

Gene:
CALML4
Ensembl Gene ID:
ENSAPLG00000003092
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003137
20170147 - 20174204
4058