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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20173136_20173934_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20173136 - 20173934
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAATT
Flanking Amino Acid:
AKFLSQDQINEFKECFSLYD
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
67.5
0.39
1
67.7
42.7
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
72.2
0.78
1.1
79.65
37.1

Associated Gene:

Gene:
CALML4
Ensembl Gene ID:
ENSAPLG00000003092
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003137
20170147 - 20174204
4058