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Intron Name: Anas_platyrhynchos_platyrhynchos_11_20175374_20176631_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20175374 - 20176631

Intron Length:

1258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAC

U12 Branch Point Sequence:

TCCCCACGAAGA

Flanking Amino Acid:

LLMGPSSLYYWYLVTEGQIF

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

61.3

0.28

52.7

34.2

Major PPT

89.9

0.9

0.7

84.7

30.1

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

38.7

-0.8

2.1

47.62

41.9

Associated Gene:

Gene:

CLN6

Ensembl Gene ID:

ENSAPLG00000003181

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003248

20174992 - 20181703

6712