Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20176755_20177708_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20176755 - 20177708

Intron Length:

954

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCACAC

U12 Branch Point Sequence:

GGGGTCACACCG

Flanking Amino Acid:

YYDEYLGHSMWYIPFFLILF

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

79.7

35.3

Major BPS

1.2

60.7

37.6

Major PPT

78.1

0.63

0.8

72.5

32.2

Minor 5ss

41.2

-1

2.9

54.5

43.9

Minor BPS

35.6

-1.2

1.9

33.43

40.1

Associated Gene:

Gene:

CLN6

Ensembl Gene ID:

ENSAPLG00000003181

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003248

20174992 - 20181703

6712