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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20180548_20181183_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20180548 - 20181183
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
CCCCTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATGTCCTGATGT
Flanking Amino Acid:
VLDFGRPIAMIILPLEWFPL
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
64.9
41.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
74.6
0.55
0.7
72
26.1
Minor 5ss
34.6
-1.7
3.4
43.3
45.4
Minor BPS
49.7
0.05
2
71.19
45.5

Associated Gene:

Gene:
CLN6
Ensembl Gene ID:
ENSAPLG00000003181
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003248
20174992 - 20181703
6712