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Intron Name: Anas_platyrhynchos_platyrhynchos_11_20181299_20181533_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20181299 - 20181533

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTGGG

5'SS Class:

major

3'SS Sequence:

TGTCCCCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

GACACTGTGACT

Flanking Amino Acid:

CLLRDLLHDPRHGAGKNEDN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

61.6

43.1

Major BPS

0.22

1.2

52.4

43.3

Major PPT

76.4

0.59

0.8

66.5

35.6

Minor 5ss

38.2

-1.3

3.1

49.7

46.5

Minor BPS

46.4

-0.2

61.1

42.8

Associated Gene:

Gene:

CLN6

Ensembl Gene ID:

ENSAPLG00000003181

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003248

20174992 - 20181703

6712