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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20193099_20197653_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20193099 - 20197653
Intron Length:
4555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATCGCTACTC
Flanking Amino Acid:
LALLVLALWKVFTY*
Intron Amino Acid Position:
1169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.8
0.69
0.8
77.5
30.5
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
44.8
-0.4
2.5
63.64
42.2

Associated Gene:

Gene:
ITGA11
Ensembl Gene ID:
ENSAPLG00000003663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003838
20193084 - 20234305
41222