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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20197310_20197653_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20197310 - 20197653
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGATCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTCTCTCTGATC
Flanking Amino Acid:
LALLVLALWKLGFFKSGSRR
Intron Amino Acid Position:
1169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
73.2
0.52
0.9
65.5
36.1
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
57.9
0.23
1.6
69.83
36.2

Associated Gene:

Gene:
ITGA11
Ensembl Gene ID:
ENSAPLG00000003663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029813
20194956 - 20234305
39350