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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20219396_20229193_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20219396 - 20229193
Intron Length:
9798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTTCTGAAGG
Flanking Amino Acid:
VQQHDIGGKKWLVVGAPYET
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.7
80.7
24.6
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
56.3
0.06
1.9
64.64
43.1

Associated Gene:

Gene:
ITGA11
Ensembl Gene ID:
ENSAPLG00000003663
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029813
20194956 - 20234305
39350
ENSAPLT00000003838
20193084 - 20234305
41222