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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20244070_20244849_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20244070 - 20244849
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
CCCCATCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
GTCTCCAAAGCC
Flanking Amino Acid:
IIASCSEDTSVRIWEIPEGG
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
72
0.5
0.8
64.8
30.4
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
45.9
-0.3
2.1
60.03
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029500
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032299
20243367 - 20245504
2138