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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20245000_20245273_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20245000 - 20245273
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAT
U12 Branch Point Sequence:
ATGGCCAAAATG
Flanking Amino Acid:
ILFSAGYDYKVLIWNLDIGE
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
56.3
0.16
1.6
57.1
49.4
Major PPT
63.6
0.31
0.8
57.2
25.7
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
44.7
-0.5
2
50.13
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029500
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032299
20243367 - 20245504
2138