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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20246755_20247100_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20246755 - 20247100
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCCGTGTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTGCTTTTATTT
Flanking Amino Acid:
EPISMIVPRRSETYQEDIYP
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
67.3
0.39
0.9
60.9
35.2
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
49.6
0.05
1.6
63.91
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027282
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021006
20244850 - 20248005
3156