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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20247192_20247318_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20247192 - 20247318
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCC
Flanking Amino Acid:
PDEWLSGVNRDPILMSLKEG
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71.1
0.48
0.8
61.7
35
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
42.8
-0.5
2.2
49.59
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027282
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021006
20244850 - 20248005
3156