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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20255611_20255807_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20255611 - 20255807
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
VDDDEDEEEPDEERGQKRKR
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
53.5
44.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
36.7
-1.5
3.3
47.3
48.1
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016831
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046998
20255357 - 20273316
17960
ENSAPLT00000040144
20255357 - 20273316
17960