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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20256723_20258520_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20256723 - 20258520
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGC
5'SS Class:
major
3'SS Sequence:
CTCGTTTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAACCTTTAAAT
Flanking Amino Acid:
GLDDEEEDEDEEEYDDDAQV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65
39.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.4
0.5
0.9
68.5
37.3
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
66.8
0.61
1.4
77.33
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016831
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040144
20255357 - 20273316
17960