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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20258720_20260382_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20258720 - 20260382
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TGGGCCTCAGAG
Flanking Amino Acid:
IKDLGTIEPLKKLENLKSLD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
65.4
46
Major BPS
78.3
0.7
1
80
32.1
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
33.8
-1.8
2.9
38.2
40.8
Minor BPS
43
-0.6
2
45.83
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016831
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040144
20255357 - 20273316
17960
ENSAPLT00000046998
20255357 - 20273316
17960