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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20260789_20272834_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20260789 - 20272834
Intron Length:
12046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
CTTTACTCACCT
Flanking Amino Acid:
LELRNRTPSDVKELVLDNCR
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80
34.8
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
43.5
-0.7
3
62.3
42.4
Minor BPS
52.9
0.17
2.1
77.18
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016831
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046998
20255357 - 20273316
17960
ENSAPLT00000040144
20255357 - 20273316
17960