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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20306475_20306841_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20306475 - 20306841
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGAGCAT
U12 Branch Point Sequence:
CATCCCGCAGCC
Flanking Amino Acid:
QFKAALKVKESFFAERLFAL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
45.8
-0.2
1.4
51.5
43.9
Major PPT
74.8
0.56
0.7
69
24.8
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
41.7
-0.6
2.3
53.47
43.8

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113