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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20308499_20308583_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20308499 - 20308583
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CCATCCCCAGCT
Flanking Amino Acid:
CLNFNCAFIAVLMLRRCLSW
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.6
38.8
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
73.2
0.52
0.8
65.8
30.2
Minor 5ss
30.4
-2.2
3.1
40.5
38.7
Minor BPS
45
-0.3
2.1
61.94
47.3

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113