Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20309778_20309892_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20309778 - 20309892

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTACC

5'SS Class:

strong_major

3'SS Sequence:

GCCCTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

TCACCGCTGACC

Flanking Amino Acid:

PCVRRGGHFEVFYWSHLSYV

Intron Amino Acid Position:

365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

76.6

31.9

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

64.6

0.33

0.9

57.1

33.4

Minor 5ss

37.6

-1.4

2.6

42.3

Minor BPS

44.2

-0.4

2.3

56.91

41.7

Associated Gene:

Gene:

NOX5

Ensembl Gene ID:

ENSAPLG00000005589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005776

20301648 - 20313760

12113