Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20310076_20310220_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20310076 - 20310220

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCCGCAGC

5'SS Class:

major

3'SS Sequence:

CCCCGTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

CAGGCCTGACAG

Flanking Amino Acid:

IVEVNLLPSKVTHLVVQRPR

Intron Amino Acid Position:

426

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.4

0.34

1.4

58.2

46.8

Major BPS

51.1

0.03

1.2

39.9

Major PPT

63.2

0.3

0.9

56.1

33.6

Minor 5ss

34.1

-1.8

44.1

43.3

Minor BPS

40.8

-0.8

1.9

38.29

44.2

Associated Gene:

Gene:

NOX5

Ensembl Gene ID:

ENSAPLG00000005589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005776

20301648 - 20313760

12113