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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20310354_20310475_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20310354 - 20310475
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCCCA
5'SS Class:
major
3'SS Sequence:
TGCCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
CCGCGTGCCACC
Flanking Amino Acid:
FTISSAPEQQGTIWLHVRAR
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
60.3
40.2
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
65.5
0.35
0.9
57.9
33.2
Minor 5ss
38.8
-1.3
2.9
48.2
47.5
Minor BPS
28.7
-1.6
2.2
30.45
36.5

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113