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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20310613_20312408_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20310613 - 20312408
Intron Length:
1796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTCTGCTC
5'SS Class:
weak_major
3'SS Sequence:
TCTGTACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAC
U12 Branch Point Sequence:
CGCTCTGTACCC
Flanking Amino Acid:
RWWRWAKVGEVSTGPGESHR
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.3
52.9
44
Major BPS
49.6
-0
1.4
51.3
43.9
Major PPT
72.7
0.51
0.9
65.7
35.1
Minor 5ss
30.7
-2.2
3.4
42.8
44.1
Minor BPS
44.7
-0.4
2.2
53.83
44.6

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113