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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20312454_20312682_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20312454 - 20312682
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
GTGTCTGCACCC
Flanking Amino Acid:
GESHRLCSIKCYIDGPYGTP
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
87.9
0.85
0.7
81
31
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
42.1
-0.6
2.3
54.69
43.7

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113