About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20313106_20313182_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20313106 - 20313182
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAACG
5'SS Class:
major
3'SS Sequence:
TGCATCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CCCCCCCGAAAC
Flanking Amino Acid:
LRGEDMTLRKVDFIWINRDQ
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
65.1
40.8
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
75.6
0.58
0.9
65.7
40.8
Minor 5ss
27
-2.6
2.9
31.5
42.5
Minor BPS
42.7
-0.5
1.8
46.69
41.8

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113