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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20313283_20313364_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20313283 - 20313364
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGCGAGGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCGGCAC
U12 Branch Point Sequence:
CCGTCCCGAGCC
Flanking Amino Acid:
ELEQAEQEPGGRFLELHLYL
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
45
-0.3
1.5
51
44.3
Major PPT
53.3
0.08
1.1
45.9
40.5
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
44
-0.4
2
51.75
45.2

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113