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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20313532_20313628_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20313532 - 20313628
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CACCTCGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCTTCTCACCT
Flanking Amino Acid:
TQPGRPDWSKVFGKVAEERK
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
82.7
25.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
63.7
0.31
0.9
54.2
36.2
Minor 5ss
16.1
-3.9
3.9
29.4
43.5
Minor BPS
52.9
0.17
1.9
71.07
46.1

Associated Gene:

Gene:
NOX5
Ensembl Gene ID:
ENSAPLG00000005589
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005776
20301648 - 20313760
12113