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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20331801_20354786_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20331801 - 20354786
Intron Length:
22986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTCCTAACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.4
0.84
0.8
84.8
35.4
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
62.3
0.37
2
76.53
39.9

Associated Gene:

Gene:
GLCE
Ensembl Gene ID:
ENSAPLG00000005999
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006219
20331508 - 20362700
31193
ENSAPLT00000042539
20330210 - 20362779
32570