About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20382948_20384213_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20382948 - 20384213
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGTAT
U12 Branch Point Sequence:
GACACTGTATTT
Flanking Amino Acid:
RVFRNGEYRETQYSFKEVFG
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
50.1
0
1.4
51.4
43.9
Major PPT
84.3
0.77
0.8
76.9
37.3
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
41.7
-0.5
2.1
53.96
42.1

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013039
20382819 - 20398803
15985
ENSAPLT00000004873
20382250 - 20398803
16554
ENSAPLT00000004867
20382250 - 20398803
16554