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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20385142_20385662_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20385142 - 20385662
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
GTTCCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTGTCTGAACA
Flanking Amino Acid:
SIGPFQAKRFVFKLDDKNGV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
77.8
31.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
81
0.7
0.8
77.5
31.2
Minor 5ss
34.5
-1.8
2.9
48.3
41.8
Minor BPS
64.8
0.46
1.5
74.27
37.2

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004867
20382250 - 20398803
16554
ENSAPLT00000013039
20382819 - 20398803
15985
ENSAPLT00000004873
20382250 - 20398803
16554