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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20386519_20387896_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20386519 - 20387896
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAGTAGG
5'SS Class:
major
3'SS Sequence:
CTTTGCCCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGCCCTTAAG
Flanking Amino Acid:
EEAPFEQIKPKPPQSKILRE
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.3
66.4
45.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
69.9
0.45
1
72.5
32.7
Minor 5ss
32.3
-2
2.6
34.7
34.5
Minor BPS
46.8
-0.4
2.2
61.68
45.5

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004867
20382250 - 20398803
16554