About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20388010_20388149_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20388010 - 20388149
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
TEEAFEVFWRGQKKRRIANT
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
86.6
0.82
0.8
84.3
29.1
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013039
20382819 - 20398803
15985
ENSAPLT00000004873
20382250 - 20398803
16554
ENSAPLT00000004867
20382250 - 20398803
16554