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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20388272_20388688_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20388272 - 20388688
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTGTCTGTAACA
Flanking Amino Acid:
LDADGDNVLQEKEQITLSQL
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
28.5
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
73.7
0.53
1
69.5
40.5
Minor 5ss
36.7
-1.5
3
50.4
46
Minor BPS
65.5
0.48
2
78.71
38.4

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013039
20382819 - 20398803
15985
ENSAPLT00000004873
20382250 - 20398803
16554
ENSAPLT00000004867
20382250 - 20398803
16554