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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20391188_20391631_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20391188 - 20391631
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TACATCTTGACC
Flanking Amino Acid:
EKKIKTLEYKIEILEKTATI
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
89
0.88
0.6
81.6
30.5
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
63.5
0.41
1.3
66.87
38.9

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013039
20382819 - 20398803
15985
ENSAPLT00000004873
20382250 - 20398803
16554
ENSAPLT00000004867
20382250 - 20398803
16554