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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20392702_20395271_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20392702 - 20395271
Intron Length:
2570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CCACTCTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTCTTCCACT
Flanking Amino Acid:
QRSVSPSPVPNAPPVRLRHR
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
71.7
34.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
63
0.29
1
62
38.4
Minor 5ss
43.4
-0.7
2.8
62.5
42.2
Minor BPS
57.6
0.32
2
79.65
42.8

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013039
20382819 - 20398803
15985