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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20397012_20397129_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20397012 - 20397129
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCTAT
5'SS Class:
major
3'SS Sequence:
TGTGTCTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
AAAGAACTAACT
Flanking Amino Acid:
DSEWTDVETRCSVAVEMRAG
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
68.6
39.1
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
79.6
0.67
0.9
77
37.2
Minor 5ss
46.8
-0.3
2.9
61
44.7
Minor BPS
43
-0.4
2.1
60.15
42.1

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013039
20382819 - 20398803
15985
ENSAPLT00000004873
20382250 - 20398803
16554
ENSAPLT00000004867
20382250 - 20398803
16554