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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20397201_20398787_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20397201 - 20398787
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GTTACTTTATTT
Flanking Amino Acid:
GPGYQHHAQPKRRKP*
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
85
0.79
0.7
78.1
36
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
61.6
0.44
1.6
77.27
39.6

Associated Gene:

Gene:
KIF23
Ensembl Gene ID:
ENSAPLG00000012518
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013039
20382819 - 20398803
15985
ENSAPLT00000004873
20382250 - 20398803
16554
ENSAPLT00000004867
20382250 - 20398803
16554