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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20516602_20517143_F

Intron Information:

Intron Rank:
150968
Intron Class:
major
Intron Phase:
Intron Coordinates:
20516602 - 20517143
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTCGTCCGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TTGTTTGTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
66.6
0.37
0.9
61
35.1
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
52
0.06
2
68.82
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031113
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038436
20515751 - 20518835
3085
ENSAPLT00000037686
20515751 - 20518835
3085