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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20535965_20549100_F

Intron Information:

Intron Rank:
126989
Intron Class:
major
Intron Phase:
Intron Coordinates:
20535965 - 20549100
Intron Length:
13136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
TCTGTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAGTTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
74.6
35.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
36.6
-1.5
2.7
46.7
41.8
Minor BPS
62.7
0.48
1.6
76.19
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018434
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039791
20535294 - 20550161
14868