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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20558003_20558140_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20558003 - 20558140
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTACGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCTCCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTTTCTCCATC
Flanking Amino Acid:
PSSKTKDLGHNDKSSTPGLK
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.3
66.4
40.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
82
0.72
0.8
74.4
35.4
Minor 5ss
34.3
-1.8
3.3
43.5
37.3
Minor BPS
50
-0
2
65.51
41

Associated Gene:

Gene:
TLE3
Ensembl Gene ID:
ENSAPLG00000029482
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043673
20553369 - 20566922
13554
ENSAPLT00000031938
20553369 - 20567252
13884