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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20558297_20558387_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20558297 - 20558387
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TTTCTCCCATCC
Flanking Amino Acid:
DDLVVDVSNEDPATPRVSPA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
65
42.7
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
75.6
0.58
0.8
68.4
31.7
Minor 5ss
31.8
-2.1
3
38.9
46.2
Minor BPS
45.9
-0.3
2
64.77
40.4

Associated Gene:

Gene:
TLE3
Ensembl Gene ID:
ENSAPLG00000029482
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043673
20553369 - 20566922
13554
ENSAPLT00000031938
20553369 - 20567252
13884